Ok. So I changed all the resistors for the Tri-Cree to 1ohm-2W.

The deep sleep LED calculated to 82ohm-1/8W, the closest the shop here offers is 82ohm-1/4W. Am I correct in assuming that using a larger wattage will just allow the resistor to dissipate more heat (and take up more space) without affecting the brightness?

Also, my crystal chamber LED calculated to 47ohm-1/8W, the closest available being 82ohm-1/4W. I think I could go with this, right? Will increasing the resistance that much really dim the LED a lot? Or is that difference negligible?

Here is an updated drawing in case anybody new reads this for the first time.